scOrange Workflows
Embedding New Cells onto an Existing t-SNE Projection
Follow chemotherapy progression by projecting a single cell datasets from an AML patient collected on different timepoints in therapy onto a t-SNE of a healthy individual’s bone marrow cells clustered according to cell type.
Identification of Cell Populations in Healthy Bone Marrow
Characterise a healthy bone marrow cell population on a dataset of healthy human bone marrow cells and take a look at the putative cell differentiation trajectories.
Pinpointing Lineage Differentiation in Human Preimplantation Embryotic Cells
Pinpoint the time of trophectoderm (TE) and inner cell mass (ICM) differentiation in human preimplantation embryotic cells.
X And Y Chromosome Expression in Human Preimplantation Embryos
Submerge yourself into the field of checkpoint blockade immunotherapy by identifying subsets of exhausted CD8+ T cells during chronic viral infections and corresponding groups in T cells isolated from tumours.
