scOrange Workflows

Automatic Cell Type Annotation

Identify cell types on t-SNE projection of the mouse pancreas cells in just one step using the Annotator widget.


Automatic Embedding of New Cells Onto an Existing Landscape

Embed single cell datasets from an AML patient collected on different timepoints in therapy onto a t-SNE of healthy individual’s bone marrow cells clustered according to cell type with the Annotator widget.


Clustering Cells in Mouse Pancreas

This workflow clusters pancreatic cells from two mouse strains and identifies marker genes for each subpopulation of the cells.


Subsets of Exhausted CD8+ T Cells

Submerge yourself into the field of checkpoint blockade immunotherapy by identifying subsets of exhausted CD8+ T cells during chronic viral infections and corresponding groups in T cells isolated from tumours.