scOrange Workflows
Marker Genes and Subpopulations
This workflow uses the Score Cell and the Marker Genes widget to score the cells according to the expression of selected markers. Scored cells can be passed to, say, t-SNE visualization, where any change of a selection of marker genes will automatically trigger the update in t-SNE to identify an associated subpopulation of cells.
Importing and Using Your Own Marker Genes
Enables you the importation of your own marker genes in the .tab format.
Automatic Cell Type Annotation
Identify cell types on t-SNE projection of the mouse pancreas cells in just one step using the Annotator widget.
Clustering Cells in Mouse Pancreas
This workflow clusters the pancreatic cells from two mouse strains and identifies the marker genes for each subpopulation of the cells.
