scOrange Blog

By: Iva Černoša, Aug 19, 2019

Automatic Embedding of New Cells Onto an Existing Landscape

Learn how to quickly embed new cells onto an existing tSNE projection using the new widget the Annotator on the dataset of a healthy individual and AML patient undergoing chemotherapy gathered by Van Galen et al. (Cell, 2016)

By: Iva Černoša, Aug 5, 2019

Automatic Cell Type Annotation

Learn how to effortlessly group and identify cell types in your dataset with a new widget: the Annotator as demonstrated here on the data from human pancreas (Baron et al., Cell Syst 2016).

By: Iva Černoša, Jul 28, 2019

Profiling Human Osteoarthritis Cartilage Chondrocytes

Identify the genes affiliated with osteoarthritis progression in the cartilage data gathered by Ji Q et al. (Annals of the Rheumatic Diseases, 2019) to shed a light on predicting clinical outcomes of the patients

By: Iva Černoša, Jun 14, 2019

Embedding New Cells onto an Existing t-SNE Projection

We analyse cell population changes in the course of chemotherapy by recreating a part of a study from Galen et al. (Cell, 2019) and projecting single cell data set from an AML patient undergoing treatment onto a t-SNE of a healthy individual.