scOrange Workflows

Automatic Embedding of New Cells Onto an Existing Landscape

Embed the single cell datasets from an AML patient collected on different timepoints in therapy onto a t-SNE of a healthy individual’s bone marrow cells clustered according to cell type with the Annotator widget.


Embedding New Cells onto an Existing t-SNE Projection

Follow chemotherapy progression by projecting a single cell datasets from an AML patient collected on different timepoints in therapy onto a t-SNE of a healthy individual’s bone marrow cells clustered according to cell type.