scOrange Blog


By: Iva Černoša, May 6, 2019

X And Y Chromosome Expression in Human Preimplantation Embryos

Using the single cell data from Petropoulos et al. (Cell, 2016) we determine the karyotype (XY, XX, X0) of the cells and inspect the time of activation of Y chromosome in a preimplantation embryo.


By: Iva Černoša, Apr 23, 2019

Subsets of Exhausted CD8+ T Cells

We reproduce a part of the study by Miller et al. (Nature Immunology, 2019) through identifying subsets of exhausted CD8+ T cells during chronic viral infections and corresponding groups in T cells isolated from tumours


By: Iva Černoša, Apr 1, 2019

Importing and Using Your Own Marker Genes

If you ever felt limited by Marker Gene widget, here you can discover how to bypass it by importing your own marker genes and using them to score your dataset


By: Iva Černoša, Mar 29, 2019

Clustering Cells in Mouse Pancreas

To reproduce a part of a study by Baron et al. (Cell Systems, 2016), we cluster mouse pancreatic cells and identify marker genes for each type of the cells.