scOrange Blog

Author: Iva Černoša, Jun 6, 2019

Identification of Cell Populations in Healthy Bone Marrow

We identify cell populations in a dataset of healthy human bone marrow cells from Galen et al. (Cell, 2019) and take a look at the putative cell differentiation trajectories.

Author: Iva Černoša, Apr 23, 2019

Subsets of Exhausted CD8+ T Cells

We reproduce a part of the study by Miller et al. (Nature Immunology, 2019) through identifying subsets of exhausted CD8+ T cells during chronic viral infections and corresponding groups in T cells isolated from tumours

Author: Iva Černoša, Apr 1, 2019

Importing and Using Your Own Marker Genes

If you ever felt limited by Marker Gene widget, here you can discover how to bypass it by importing your own marker genes and using them to score your dataset

Author: Iva Černoša, Mar 29, 2019

Clustering Cells in Mouse Pancreas

To reproduce a part of a study by Baron et al. (Cell Systems, 2016), we cluster mouse pancreatic cells and identify marker genes for each type of the cells.