scOrange Workflows

General Preprocessing

Loads the data, annotates it and filters it. Single Cell Preprocesses widget normalises and algorithmizes the samples, additionally it can be used to select the most variable genes or to standardizes them. Such data can be further analysed.

Annotating Data

Load your data with the Load Data widget, feed it to the Genes widget to recognise and annotate the genes in your dataset employing NCBI Entrez database. Create a new class attribute and group the samples according to their annotation using Create Class widget.